PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00033g01322.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C3H
Protein Properties Length: 516aa    MW: 54899.2 Da    PI: 8.0445
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00033g01322.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.92.5e-113660327
                              S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                              ++ C +++rtG C yG rC+F+H++
  Peaxi162Scf00033g01322.1 36 EPDCIYYLRTGVCGYGTRCRFNHPR 60
                              589********************96 PP

2zf-CCCH35.71.5e-1182106327
                               S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                               ++ C++++rtG Ck+G +Ck++H++
  Peaxi162Scf00033g01322.1  82 QPVCQYYMRTGMCKFGTSCKYHHPK 106
                               689********************96 PP

3zf-CCCH35.71.4e-11173198227
                               -S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                               ++++C+++++tG+Ck+G +Ck++H++
  Peaxi162Scf00033g01322.1 173 GEKECSYYMKTGQCKFGITCKYHHPQ 198
                               6789********************97 PP

4zf-CCCH35.71.5e-11343369127
                               --S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                               +++++C++++++G Ck+G++C+++H+p
  Peaxi162Scf00033g01322.1 343 PGQPECQYYMKYGDCKFGSSCRYHHPP 369
                               5789*********************97 PP

5zf-CCCH35.51.7e-11391415327
                               S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                ++C+++a++G Ck+G++CkF H++
  Peaxi162Scf00033g01322.1 391 APICSHYAQNGVCKFGPSCKFDHPM 415
                               589********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.313361IPR000571Zinc finger, CCCH-type
SMARTSM003566.7E-43360IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-83660IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-63662IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-53960IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.33879107IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-679106IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-682106IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-882106IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-484105IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.295171199IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-5171198IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-9173198IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-6174199IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.464342370IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-6342369IPR000571Zinc finger, CCCH-type
PfamPF006429.1E-9344369IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5346369IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-6387414IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878388416IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-7388415IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-8391415IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-5393413IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MEQWTSPASD TGLEEPMWQL SLGSGGPESY PQRANEPDCI YYLRTGVCGY GTRCRFNHPR  60
DRASLVMGLR ASGGEYPERV GQPVCQYYMR TGMCKFGTSC KYHHPKQGGG SSTLVTHNIY  120
GYPLRPVCFF FMFILFLLFP CCIIFHFFPC FSFNKFDHGS IFLILLIELL SQGEKECSYY  180
MKTGQCKFGI TCKYHHPQPA GAQVPPSVAG FGAFPSPVAI SPPATYPALQ SPSVQSAQQY  240
GVVAGNWPVA RPTLLPGSYL PGTYGPMLFP PGLVPMPGWT PYQASGGPVP SPITQSAAGA  300
APVYGLTQLS ASAPAYTGPY MSLTSSAGAS GSIQREHALP EKPGQPECQY YMKYGDCKFG  360
SSCRYHHPPE WSGPKAGFIL SAMGLPLRPG APICSHYAQN GVCKFGPSCK FDHPMGISYS  420
PSASSLVDMP VAPYPVGSSV GTLAPSSSSS DLRPELVSGS SQDAFSNQIS SMSAPSGSVG  480
SMFSKGGSAG AQQSRQSSTS SIASSSTGHE GEAHTS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016470540.10.0PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X1
SwissprotQ84W911e-154C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLM1C2H30.0M1C2H3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000583230.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24122459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-153C3H family protein